corneto.io.MetabolicModel

class corneto.io.MetabolicModel(model_info=<factory>, compartments=<factory>, unit_definitions=<factory>, species=<factory>, parameters=<factory>, gene_products=<factory>, reactions=<factory>, objectives=<factory>, groups=<factory>, active_objective=None)

Bases: object

Plain parsed SBML records, independent of CORNETO.

Parameters:

• model_info (dict)

• compartments (dict[str, dict])

• unit_definitions (dict[str, dict])

• species (dict[str, dict])

• parameters (dict[str, dict])

• gene_products (dict[str, dict])

• reactions (dict[str, dict])

• objectives (dict[str, dict])

• groups (dict[str, dict])

• active_objective (str | None)

__init__(model_info=<factory>, compartments=<factory>, unit_definitions=<factory>, species=<factory>, parameters=<factory>, gene_products=<factory>, reactions=<factory>, objectives=<factory>, groups=<factory>, active_objective=None)

Parameters:

• model_info (dict)

• compartments (dict[str, dict])

• unit_definitions (dict[str, dict])

• species (dict[str, dict])

• parameters (dict[str, dict])

• gene_products (dict[str, dict])

• reactions (dict[str, dict])

• objectives (dict[str, dict])

• groups (dict[str, dict])

• active_objective (str | None)

Return type:

None

Methods

__init__([model_info, compartments, ...])

Attributes

active_objective
model_info
compartments
unit_definitions
species
parameters
gene_products
reactions
objectives
groups

model_info: dict

compartments: dict[str, dict]

unit_definitions: dict[str, dict]

species: dict[str, dict]

parameters: dict[str, dict]

gene_products: dict[str, dict]

reactions: dict[str, dict]

objectives: dict[str, dict]

groups: dict[str, dict]

active_objective: str | None = None